pyanno4rt.patient.import_functions._generate_segmentation_from_dcm

DICOM folder-based segmentation dictionary generation.

Overview

Function

generate_segmentation_from_dcm(data, ct_slices, computed_tomography)

Generate the segmentation dictionary from a folder with DICOM (.dcm) files.

Functions

pyanno4rt.patient.import_functions._generate_segmentation_from_dcm.generate_segmentation_from_dcm(data, ct_slices, computed_tomography)[source]

Generate the segmentation dictionary from a folder with DICOM (.dcm) files.

Parameters:

  • data (object of class pydicom.dataset.FileDataset) – The pydicom.dataset.FileDataset object with information on the segmented structures.

  • slices (tuple) – Tuple of pydicom.dataset.FileDataset objects with information on the CT slices.

  • computed_tomography (dict) – Dictionary with information on the CT images.

Returns:

segmentation – Dictionary with information on the segmented structures.

Return type:

dict

Raises:

ValueError – If the contour sequence for a segment includes out-of-slice points.